Node 52
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	1	0	G	1
6	0	0	1	0	G	1
7	1	0	0	0	A	1
8	0	0	0	1	T	1
9	0	0.99	0	0.01	C	0.99
10	0.93	0.06	0.01	0	A	0.93
11	0	0	0	1	T	1
12	0	1	0	0	C	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.07	0	0.93	T	0.93
16	1	0	0	0	A	1
17	1	0	0	0	A	1
18	0	1	0	0	C	1
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.84	0	0.16	0	A	0.84
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0	0	1	0	G	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	1	0	0	C	1
31	0	1	0	0	C	1
32	0.17	0	0.83	0	G	0.83
33	0.08	0.03	0.89	0	G	0.89
34	0	1	0	0	C	1
35	1	0	0	0	A	1
36	0.1	0	0.9	0	G	0.9
37	0.81	0.01	0.17	0	A	0.81
38	0	0	0	1	T	1
39	0	0.17	0	0.83	T	0.83
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.99	0	0.01	C	0.99
43	0	0	1	0	G	1
44	0	1	0	0	C	1
45	0.01	0.86	0	0.13	C	0.86
46	0	0	0	1	T	1
47	0	1	0	0	C	1
48	0	0.3	0.01	0.69	T	0.69
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.02	0.21	0.07	0.7	T	0.7
52	0.38	0.62	0	0	C	0.62
53	0.39	0	0.61	0	G	0.61
54	0.11	0.01	0.88	0	G	0.88
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.6	0	0.4	0	A	0.6
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0.18	0	0.82	0	G	0.82
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	1	0	0	C	1
70	0.03	0	0.97	0	G	0.97
71	0	0	0	1	T	1
72	0	0.13	0	0.86	T	0.86
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.01	0	0.99	0	G	0.99
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0	0	1	T	1
82	0	0	1	0	G	1
83	1	0	0	0	A	1
84	0.99	0	0.01	0	A	0.99
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0	0	1	T	1
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	0.94	0	0.06	C	0.94
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0	0.99	0	0.01	C	0.99
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.93	0	0.07	C	0.93
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0	0	1	T	1
100	0	1	0	0	C	1
101	1	0	0	0	A	1
102	0.01	0	0.98	0	G	0.98
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0.11	0.55	0.02	0.32	C	0.55
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0	0.99	0	0.01	C	0.99
112	0	0	1	0	G	1
113	0	1	0	0	C	1
114	0	0.93	0	0.07	C	0.93
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	1	0	0	C	1
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0	0.89	0.01	0.1	C	0.89
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.99	0	0.01	C	0.99
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.04	0.01	0.95	T	0.95
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0.01	0	0.99	T	0.99
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.29	0.33	0.1	0.28	C	0.33
133	0	0.99	0	0.01	C	0.99
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	1	0	0	0	A	1
137	0	1	0	0	C	1
138	0.01	0.69	0.03	0.27	C	0.69
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.2	0	0.8	T	0.8
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	1	0	0	C	1
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0	0	1	0	G	1
148	0	0	1	0	G	1
149	1	0	0	0	A	1
150	0.45	0	0.55	0	G	0.55
151	1	0	0	0	A	1
152	0	1	0	0	C	1
153	0.85	0.09	0.04	0.01	A	0.85
154	0	0	1	0	G	1
155	1	0	0	0	A	1
156	0	1	0	0	C	1
157	0	0.01	0	0.99	T	0.99
158	0	1	0	0	C	1
159	0	0.92	0	0.07	C	0.92
160	0	0	1	0	G	1
161	0	1	0	0	C	1
162	0.03	0.1	0.86	0.01	G	0.86
163	0	0	0	0	-	0
164	0	0	0	0	-	0
165	0	0	0	0	-	0
166	0.97	0	0.03	0	A	0.97
167	0	1	0	0	C	1
168	0	1	0	0	C	1
169	0	0	1	0	G	1
170	1	0	0	0	A	1
171	0	0.01	0	0.99	T	0.99
172	0	0	1	0	G	1
173	0	1	0	0	C	1
174	0.08	0	0.92	0	G	0.92
175	0	1	0	0	C	1
176	0	0	0	1	T	1
177	0.04	0	0.96	0	G	0.96
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.01	0	0.99	T	0.99
181	1	0	0	0	A	1
182	0	1	0	0	C	1
183	0	1	0	0	C	1
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.03	0.13	0.71	0.13	G	0.71
187	0	1	0	0	C	1
188	1	0	0	0	A	1
189	0	0	0	1	T	1
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0.06	0.6	0.01	0.32	C	0.6
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.28	0	0.72	T	0.72
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.1	0	0.9	T	0.9
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0	0	1	T	1
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.69	0	0.31	0	A	0.69
205	0.01	0	0.99	0	G	0.99
206	0	0	0	1	T	1
207	0	0.01	0.99	0	G	0.99
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0	0	1	T	1
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0	0	1	0	G	1
220	0	1	0	0	C	1
221	1	0	0	0	A	1
222	1	0	0	0	A	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.18	0	0.82	0	G	0.82
226	0	1	0	0	C	1
227	0.99	0	0.01	0	A	0.99
228	0.05	0	0.95	0	G	0.95
229	0	1	0	0	C	1
230	1	0	0	0	A	1
231	1	0	0	0	A	1
232	1	0	0	0	A	1
233	1	0	0	0	A	1
234	1	0	0	0	A	1
235	1	0	0	0	A	1
236	0	0	0	1	T	1
237	0.03	0.02	0.01	0.94	T	0.94
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.93	0	0.07	0	A	0.93
241	0	0	0	1	T	1
242	1	0	0	0	A	1
243	0	0.01	0	0.99	T	0.99
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.01	0.9	0.07	0.02	C	0.9
247	0.01	0.02	0.97	0	G	0.97
248	0	1	0	0	C	1
249	0.01	0.93	0.04	0.02	C	0.93
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.01	0	0.99	0	G	0.99
254	0.99	0	0.01	0	A	0.99
255	0.03	0.02	0.87	0.07	G	0.87
256	0.83	0	0.17	0	A	0.83
257	0.33	0.63	0.02	0.02	C	0.63
258	0.29	0.02	0.59	0.1	G	0.59
259	0	0.38	0	0.62	T	0.62
260	0	0	0	1	T	1
261	0.29	0.1	0.6	0.02	G	0.6
262	0	1	0	0	C	1
263	1	0	0	0	A	1
264	0	0	1	0	G	1
265	0.01	0	0.99	0	G	0.99
266	0	0	0	1	T	1
267	0.28	0.05	0.66	0.01	G	0.66
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.02	0.02	0.23	0.73	T	0.73
271	0	0	1	0	G	1
272	1	0	0	0	A	1
273	0.98	0	0.02	0	A	0.98
274	0	0	0	1	T	1
275	1	0	0	0	A	1
276	0	0.04	0	0.96	T	0.96
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0	0	1	T	1
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0	0.94	0	0.06	C	0.94
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0	0	1	T	1
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.94	0	0.06	C	0.94
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.04	0	0.96	T	0.96
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0	0.88	0	0.12	C	0.88
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.01	0	0.99	T	0.99
304	0	0.98	0	0.02	C	0.98
305	0	0	0	1	T	1
306	0.05	0	0.95	0	G	0.95
307	1	0	0	0	A	1
308	1	0	0	0	A	1
309	0.99	0	0	0	A	0.99
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.78	0	0.22	C	0.78
313	0	0	0	0.99	T	0.99
314	0	0	1	0	G	1
315	0	0.88	0	0.12	C	0.88
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.99	0	0.01	0	A	0.99
322	0.73	0	0.27	0	A	0.73
323	1	0	0	0	A	1
324	0.98	0.02	0	0	A	0.98
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0	1	0	0	C	1
328	0	0	1	0	G	1
329	0	0	0	1	T	1
330	0.35	0.01	0.57	0.07	G	0.57
331	0	0	1	0	G	1
332	1	0	0	0	A	1
333	0.1	0	0.9	0	G	0.9
334	0	0	1	0	G	1
335	0	0	0	1	T	1
336	0.03	0.24	0.45	0.28	G	0.45
337	0	1	0	0	C	1
338	0.98	0	0.02	0	A	0.98
339	0	1	0	0	C	1
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	1	0	0	0	A	1
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.79	0	0.21	0	A	0.79
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.84	0	0.16	0	A	0.84
349	1	0	0	0	A	1
350	0	0	0	1	T	1
351	0.01	0.01	0.98	0	G	0.98
352	0	0	1	0	G	1
353	0	0	0	1	T	1
354	0.02	0.03	0.13	0.82	T	0.82
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	1	0	G	1
360	0	0.93	0	0.07	C	0.93
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0	0.84	0	0.16	C	0.84
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0	0.99	0	0	C	0.99
368	1	0	0	0	A	1
369	0	0	0	1	T	1
370	0	0	1	0	G	1
371	1	0	0	0	A	1
372	1	0	0	0	A	1
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0	0.95	0.02	0.02	C	0.95
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	0.09	0	0.91	T	0.91
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0.01	0.06	0.03	0.9	T	0.9
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0	0	1	T	1
385	1	0	0	0	A	1
386	0	0	0	1	T	1
387	0	0.95	0	0.05	C	0.95
388	0	0	0	1	T	1
389	0	0	1	0	G	1
390	0	0.22	0	0.77	T	0.77
391	1	0	0	0	A	1
392	1	0	0	0	A	1
393	0	0	0	0.99	T	0.99
394	0.93	0.01	0.05	0	A	0.93
395	1	0	0	0	A	1
396	0	1	0	0	C	1
397	0	0	1	0	G	1
398	0	1	0	0	C	1
399	0.44	0.01	0.51	0.04	G	0.51
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.44	0.06	0.48	0.01	G	0.48
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	1	0	0	0	A	1
411	1	0	0	0	A	1
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0	0.97	0.02	0.01	C	0.97
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0.98	0	0.01	0.01	A	0.98
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0	1	0	0	C	1
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.01	0.86	0.1	0.03	C	0.86
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	1	0	0	C	1
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.93	0	0.07	C	0.93
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0	0	1	T	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0	0	1	T	1
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0	0	1	T	1
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	0.28	0	0.72	T	0.72
451	0	1	0	0	C	1
452	1	0	0	0	A	1
453	0	0	0	0.99	T	0.99
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.94	0	0.06	C	0.94
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGAGGATCATCGATAACTTAGAACAGTTCCGGCAGATTTACGCCTCTGGTCGGAAATGGCAGCGCTGCGTTGAAGCGATTGAAAATATCGACAACATTCAGCCCGGCGTCGCCCACTCCATCGGTGATTCCCTGACCTATCGCGTGGAGACAGACTCCGCG---ACCGATGCGCTGTTTACCGGGCATCGCCGTTATTTTGAAGTGCATTACTACCTGCAAGGGCAGCAAAAAATTGAATATGCCGCCAAAGAGACGTTGCAGGTGGTTGAATATTATCGCGATGAAACCGATCGCGAATATCTGAAAGGCTGC---GGAAAAACCGTGGAGGTGCACGAAGGACAAATGGTTATTTGCGACAACCATGAAGCCTATCGTTTTATCTGTAATAACGCGGTG------AAAAAAGTCGTACTCAAAGTCACCATCGAAGATGGTTATTTTCATAACAAATAA

The most probable DNA sequence without gaps is:
ATGAGGATCATCGATAACTTAGAACAGTTCCGGCAGATTTACGCCTCTGGTCGGAAATGGCAGCGCTGCGTTGAAGCGATTGAAAATATCGACAACATTCAGCCCGGCGTCGCCCACTCCATCGGTGATTCCCTGACCTATCGCGTGGAGACAGACTCCGCGACCGATGCGCTGTTTACCGGGCATCGCCGTTATTTTGAAGTGCATTACTACCTGCAAGGGCAGCAAAAAATTGAATATGCCGCCAAAGAGACGTTGCAGGTGGTTGAATATTATCGCGATGAAACCGATCGCGAATATCTGAAAGGCTGCGGAAAAACCGTGGAGGTGCACGAAGGACAAATGGTTATTTGCGACAACCATGAAGCCTATCGTTTTATCTGTAATAACGCGGTGAAAAAAGTCGTACTCAAAGTCACCATCGAAGATGGTTATTTTCATAACAAATAA

The accuracy score for that sequence is 0.963955555555556

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 3.1013352783674e-09.
The natural log of that probability is -19.5914330832378.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
R	1	A	0	9999	
I	1	A	0	9999	
I	0.93	L	0.06	15.5	
D	1	A	0	9999	
N	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
R	0.83	Q	0.1649	5.03335354760461	
Q	1	A	0	9999	
I	0.81	V	0.17	4.76470588235294	
Y	1	A	0	9999	
A	1	R	0	9999	
S	1	A	0	9999	
G	1	A	0	9999	
R	0.607682	Q	0.239382	2.53854508693218	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.9603	I	0.0297	32.3333333333333	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
Q	0.99	A	0	9999	
P	1	A	0	9999	
G	1	A	0	9999	
V	1	A	0	9999	
A	1	R	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
T	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
V	1	A	0	9999	
E	1	A	0	9999	
T	0.99	A	0	9999	
D	1	A	0	9999	
S	0.9801	P	0.0099	99	
A	1	R	0	9999	
	0	-	0	0
T	0.97	A	0.03	32.3333333333333	
D	1	A	0	9999	
A	1	R	0	9999	
L	1	A	0	9999	
F	1	A	0	9999	
T	1	A	0	9999	
G	1	A	0	9999	
H	1	A	0	9999	
R	0.99	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
E	1	A	0	9999	
V	0.99	M	0.0099	100	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
Q	1	A	0	9999	
G	1	A	0	9999	
Q	0.99	R	0.01	99	
Q	1	A	0	9999	
K	1	A	0	9999	
I	0.99	M	0.01	99	
E	1	A	0	9999	
Y	1	A	0	9999	
A	1	R	0	9999	
A	0.97	P	0.02	48.5	
K	1	A	0	9999	
E	0.88209	D	0.088209	10	
T	0.5229	K	0.241032	2.16942148760331	
L	0.9356	F	0.0744	12.5752688172043	
Q	1	A	0	9999	
V	0.99	M	0.0066	150	
V	1	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
K	0.99	A	0	9999	
G	1	A	0	9999	
C	0.99	A	0	9999	
	0	-	0	0
G	1	A	0	9999	
K	0.7154	E	0.2646	2.7037037037037	
T	1	A	0	9999	
V	1	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
H	0.98	R	0.02	49	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
M	0.98	I	0.02	49	
V	1	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
H	0.99	A	0	9999	
E	1	A	0	9999	
A	0.99	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
I	1	A	0	9999	
C	0.99	A	0	9999	
N	0.99	A	0	9999	
N	0.93	D	0.05	18.6	
A	1	R	0	9999	
V	0.99	A	0	9999	
	0	-	0	0
	0	-	0	0
K	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
H	0.99	A	0	9999	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MRIIDNLEQFRQIYASGRKWQRCVEAIENIDNIQPGVAHSIGDSLTYRVETDSA-TDALFTGHRRYFEVHYYLQGQQKIEYAAKETLQVVEYYRDETDREYLKGC-GKTVEVHEGQMVICDNHEAYRFICNNAV--KKVVLKVTIEDGYFHNKX

The most probable ancestral protein sequence without gaps is:
MRIIDNLEQFRQIYASGRKWQRCVEAIENIDNIQPGVAHSIGDSLTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAAKETLQVVEYYRDETDREYLKGCGKTVEVHEGQMVICDNHEAYRFICNNAVKKVVLKVTIEDGYFHNKX

The accuracy score for that sequence is 0.985693813333333

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.0797952293121708
The natural log of that probability is -2.52829155936896.

